RESUMEN
The COVID-19 pandemic highlighted the importance of global genomic surveillance to monitor the emergence and spread of SARS-CoV-2 variants and inform public health decision-making. Until December 2020 there was minimal capacity for viral genomic surveillance in most Caribbean countries. To overcome this constraint, the COVID-19: Infectious disease Molecular epidemiology for PAthogen Control & Tracking (COVID-19 IMPACT) project was implemented to establish rapid SARS-CoV-2 whole genome nanopore sequencing at The University of the West Indies (UWI) in Trinidad and Tobago (T&T) and provide needed SARS-CoV-2 sequencing services for T&T and other Caribbean Public Health Agency Member States (CMS). Using the Oxford Nanopore Technologies MinION sequencing platform and ARTIC network sequencing protocols and bioinformatics pipeline, a total of 3610 SARS-CoV-2 positive RNA samples, received from 17 CMS, were sequenced in-situ during the period December 5th 2020 to December 31st 2021. Ninety-one Pango lineages, including those of five variants of concern (VOC), were identified. Genetic analysis revealed at least 260 introductions to the CMS from other global regions. For each of the 17 CMS, the percentage of reported COVID-19 cases sequenced by the COVID-19 IMPACT laboratory ranged from 0·02% to 3·80% (median = 1·12%). Sequences submitted to GISAID by our study represented 73·3% of all SARS-CoV-2 sequences from the 17 CMS available on the database up to December 31st 2021. Increased staffing, process and infrastructural improvement over the course of the project helped reduce turnaround times for reporting to originating institutions and sequence uploads to GISAID. Insights from our genomic surveillance network in the Caribbean region directly influenced non-pharmaceutical countermeasures in the CMS countries. However, limited availability of associated surveillance and clinical data made it challenging to contextualise the observed SARS-CoV-2 diversity and evolution, highlighting the need for development of infrastructure for collecting and integrating genomic sequencing data and sample-associated metadata.
RESUMEN
Since the announcement by the World Health Organization (WHO) of an outbreak of a contagious respiratory viral pneumonia in Wuhan, China, in December 2019 (later named as COVID-19), several research works have been carried out to unstitch the therapeutic options and combat the disease using various aproaches and modalities. These works are currently at different clinical trial stages, and their results may be determined by the outcome of the ongoing trial process. There is the need for a collection of information regarding the availlable therapeutic options related to COVID-19. this article therefore reviewed emerging and re-emerging therapeutic compounds/drugs used in COVID-19 management and reports of clinical trials, with the view to summarize and highlight their prospect and possible adverse effects to allow more extensive choice by clinicians, researchers, and policymakers. The approach used involved retrieval of related collections found in selected repositories including, Medline, Scopus, PubMed, and Google scholar. Only experimental or clinical studies were included. Out of the 39 materials retrieved, 26 (66.67%) studies were based on clinical trials, 12 (30.77%) were classified as in vitro studies, and only one (2.56%) involved experimental animal study. Of the agents evaluated for COVID-19 therapeutics, 15 (38.46%) were anti-viral, four (10.26%) antimalarial, four studies were immunotherapeutics (10.26%), two studies (5.13%) were antibacterial, while, one (2.56%) study wasfor antiparasitic , anticoagulant, anti-inflammatory, anti-viral/antimalarial, and anti-viral/herbal combination for each. Also, eight studies (20.51%) were antibiotic/antimalarial.. This review indicates that there is both a race and quest in the test of antiviral agents against COVID-19 and that arbidol seems to have dominated in the studies analyzed. The use of anticoagulants and antibiotics, such as teicoplanin and azithromycin/hydroxychloroquine were reported to also play a leading role in the management of the disease. Likewise, dexamethasone has been recently claimed to be effective in patients in need of respiratory assistance. Based on unresolved controversies and inconclusive findings, it could be said that generally, a single and specific therapeutics to COVID-19 is still a mirage. There is, thus, an urgent need to test more potent compounds and agents to establish much safer and highly efficacious drugs/agents for the disease, even as we continue to learn more about the disease as well as the characteristic of the virus.